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what is the term used to represent a set of bacterial genes under coordinate control?

Ditulis Minggu, 10 April 2022 Tulis Komentar Edit

Abstract

Microbes play key roles in diverse biogeochemical processes including nutrient cycling. Still, responses of soil microbial community and functional genes to long-term integrated fertilization (chemical combined with organic fertilization) remain unclear. Here, nosotros used pyrosequencing and a microarray-based GeoChip to explore the shifts of microbial community and functional genes in a paddy soil which received over 21-year fertilization with diverse regimes, including control (no fertilizer), rice straw (R), rice straw plus chemical fertilizer nitrogen (NR), N and phosphorus (NPR), NP and potassium (NPKR), and reduced rice straw plus reduced NPK (L-NPKR). Significant shifts of the overall soil bacterial limerick only occurred in the NPKR and L-NPKR treatments, with enrichment of sure groups including Bradyrhizobiaceae and Rhodospirillaceae families that benefit college productivity. All fertilization treatments significantly altered the soil microbial functional structure with increased diversity and abundances of genes for carbon and nitrogen cycling, in which NPKR and L-NPKR exhibited the strongest effect, while R exhibited the least. Functional gene construction and abundance were significantly correlated with corresponding soil enzymatic activities and rice yield, respectively, suggesting that the structural shift of the microbial functional community nether fertilization might promote soil nutrient turnover and thereby affect yield. Overall, this study indicates that the combined application of rice harbinger and balanced chemic fertilizers was more pronounced in shifting the bacterial composition and improving the functional variety toward higher productivity, providing a microbial signal of view on applying a cost-effective integrated fertilization regime with rice straw plus reduced chemical fertilizers for sustainable food management.

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Acknowledgements

The authors kindly give thanks John Quensen, for his sincere aid in 16S rRNA gene pyrosequencing and data processing, and Shijie Bai and Kai Xue for their kind assistance in GeoChip experiment and statistical analyses.

Funding

This research was financially supported past the National Natural Science Foundation of China, Grant Nos. 41601242 and 41430858, and the Strategic Priority Enquiry Programme of Chinese Academy of Sciences, Grant Nos. XDB15020302 and XDB15020402.

Author information

Affiliations

  1. Land Key Laboratory of Urban and Regional Ecology, Enquiry Center for Eco-Environmental Sciences, Chinese University of Sciences, Beijing, 100085, China

    Long-Jun Ding & Guo-Xin Sunday

  2. Primal Laboratory of Urban Environment and Wellness, Establish of Urban Environs, Chinese Academy of Sciences, Xiamen, Fujian Province, 361021, China

    Jian-Qiang Su

  3. Cardinal Laboratory of Agro-ecological Processes in Subtropical Regions and Changsha Observation and Inquiry Station for the Agronomical Environment, Establish of Subtropical Agriculture, Chinese Academy of Sciences, Changsha, Hunan Province, 410125, China

    Jin-Shui Wu

  4. Fundamental Laboratory of Agro-ecological Processes in Subtropical Regions and Taoyuan Agro-ecosystem Enquiry Station, Soil Molecular Ecology Section, Establish of Subtropical Agriculture, Chinese Academy of Sciences, Changsha, Hunan Province, 410125, Prc

    Wen-Xue Wei

Corresponding author

Correspondence to Jian-Qiang Su.

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The authors declare that they have no conflict of interest.

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This article does non contain whatsoever studies with homo participants or animals performed by any of the authors.

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Ding, LJ., Su, JQ., Sun, GX. et al. Increased microbial functional diversity under long-term organic and integrated fertilization in a paddy soil. Appl Microbiol Biotechnol 102, 1969–1982 (2018). https://doi.org/10.1007/s00253-017-8704-8

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  • DOI : https://doi.org/10.1007/s00253-017-8704-8

Keywords

  • Fertilization
  • Microbial community
  • Functional gene construction
  • Rice yield
  • Paddy soil

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